* [[https://ambermd.org/tutorials/advanced/tutorial22/index.php | Tutorial link in Amber official site]] * [[http://dx.doi.org/10.1063/1.1755656 | Original paper by McCammon]] * Template * Setup is available on green:/mnt/d8/xuelab/MD/amber.tpl/RNA.2fs/5_run.amd * Example is available on rainbow:/mnt/d2/yxue/amber/glna/free.mutant/5_run.amd.gm1