===== Online Calculator ===== * Buffer preparation * [[http://www.reachdevices.com/Protein/BiologicalBuffers.html| Various buffers and their pKa]] * Sequence analysis * [[http://www.idtdna.com/analyzer/Applications/OligoAnalyzer/ | OligoAnalyzer]] * [[http://www.basic.northwestern.edu/biotools/oligocalc.html | OligoCalc]] * Secondary structure predictor * [[http://www.major.iric.ca/MC-Fold/ | MC-fold]] * [[http://rna.tbi.univie.ac.at/ | RNAfold]] * Tertiary structure predictor * [[http://www.major.iric.ca/MC-Sym/ | MC-Sym]] * [[http://rnacomposer.cs.put.poznan.pl/ | RNAComposer]] * Database * [[http://mods.rna.albany.edu/mods/| Searchable database of RNA modifications]] * Making RNA plot * [[http://varna.lri.fr/ | vaRNA software]] * Protein analysis * [[http://web.expasy.org/protparam/| ProtParam(Protein PI)]] * [[http://protcalc.sourceforge.net| Protein Calculator]] * [[http://www.molbiol.ru/eng/scripts/01_04.html| Weight to Molar Quantity (for proteins)]] * [[http://www.encorbio.com/protocols/Codon.htm| Codon Optimization Calculator]] * [[http://www.bioinformatics.org/sms/rev_comp.html| Reverse Complement]] * [[http://bio.lundberg.gu.se/edu/translat.html| DNA to protein translation]] * PBSA * [[http://nbcr-222.ucsd.edu/pdb2pqr_2.1.1/ | PDB2PQR & APBS server]] ===== Database ===== * Protein genomic database: [[http://smart.embl-heidelberg.de/ | SMART]] ===== Programming Tutorial ===== * C++: http://www.cplusplus.com/doc/tutorial/