tar -xzf *.tgz
sudo apt-get install openmpi libopenmpi-dev
Error! If you get an error like
/usr/bin/ld: cannot find -lz
SCons may be looking for 32 bit libraries on a 64 bit machine. Look up how to install the missing dependency; in this case
sudo apt-get install lib32z1-dev
cd rosetta_src_2017.08.59291_bundle/main/source ls bin
If not compiled, bin dir should be empty
$nohup ./scons.py -j 4 mode=release bin extras=mpi &
Building Rosetta,it might take hours
Tips! you might come across many mistakes, if you don't know how to handle ,the page following may helps Help Documentation
tar -xvzf csrosetta_toolbox_ver3.3.tgz
The installation script is in the top-level toolbox directory and has to be run at least once for each installation.The installation script will perform several tasks:
>>generate init script: csrosetta3/com/init >>integrate ROSETTA >>integrate existing TALOS+ or download from http://spin.niddk.nih.gov/NMRPipe >>download chemical shift VALL from www.csrosetta.org >>download BLAST executable from ftp.ncbi.nlm.nih.gov/blast/ >>download genome/nr database from ftp.ncbi.nlm.nih.gov/blast/
The script is able to resume broken downloads and can also be rerun at a later time to check for any updates.
cd csrosetta3 nohup python install.py &
Error!:cannot find rosetta binaries and rosetta database We can specify the rosetta and rosetta databse with
./install.py -rosetta ***/rosetta/main/source/bin/ -rosetta_database ***/rosetta/main/database/
#add the following into ~/.cshrc or ~/.bashrc
#loading CS-Rosetta toolbox
source $HOME/csrosetta3/com/init
pick_fragments -cs tutorials/inputs/SgR145.tab
“Error!: Can't identify secondary structure file type (needs vertical psipred_ss2 or talos+ pred.ss):[target_name].fasta.talos/predSS.tab”
proceed as follows:
1) Open the predSS.tab file that has been created in the folder [target_name].fasta.talos/predSS.tab 2) Insert a line at the very top that says "REMARK TALOS-N" 3) Resubmit your pick_fragments command on the command line. The fragment picker will pick up where it left off.</WRAP>