Table of Contents

Docking in Glide

Tutorial:https://people.chem.ucsb.edu/kahn/kalju/chem162/public/docking_glide.html A ppt that introduce schrodinger:https://www.msi.umn.edu/sites/default/files/SchrodingerTutorial2011.pdf Mastro Tutorial,more details can be found in this:https://isp.ncifcrf.gov/files/isp/uploads/2010/07/mae90_tutorial.pdf

Docking in AutoDock Vina

Tutorial:http://autodock.scripps.edu/faqs-help/tutorial/using-autodock-4-with-autodocktools/2012_ADTtut.pdf

Docking using Haddock

http://www.bonvinlab.org/software/haddock2.2/manual/

benchmark dataset for docking

DUD (Directory of Useful Decoys): http://vina.scripps.edu/ https://cactus.nci.nih.gov/ncidb2.2/