• http://medschool.lsuhsc.edu/biochemistry/docs/PyMOL-QuickRef-0905.pdf

On Windows, use 'pymolrc', 'pymolrc.py' or 'pymolrc.pym'. For global defaults (all users), you can place a .pymolrc file in C:\Program Files\DeLano Scientific\PyMOL (or C:\Program Files\PyMOL\PyMOL). You can launch PyMOL from the applications menu or from the icon on your desktop (if you placed one there).

• Click “Mouse Mode” until you see “3-Button Editing”, and then use mouse following the instruction Ref
  • Shift + left click to rotate
  • Shift + middle click to translate
• Ctrl + right click on a bond to show dihedral angle
• Ctrl + left click and drag to change dihedral angle

• Using APBS
• Using Delphi

• http://biology.stackexchange.com/questions/2088/turn-off-multithreading-in-pymol

• http://kpwu.wordpress.com/2012/05/24/pymol-different-colors-of-nucleic-acid-rings/
• http://kpwu.wordpress.com/2011/07/26/pymol-example-of-dna/
• http://kpwu.wordpress.com/2011/07/28/pymol-dna-example-ii/
• http://www.pymolwiki.org/index.php/Examples_of_nucleic_acid_cartoons
• Example:

set orthoscopic, on
bg_color white
set cartoon_ring_mode, 1
set cartoon_ring_transparency, 0.3
set cartoon_ring_color, green
color green
viewport 480, 480
ray

• http://pelican.rsvs.ulaval.ca/mediawiki/index.php/PyMOL_tips_and_tricks
• Make a animation for rotating a molecule

cmd.movie.add_roll(2.0, axis='y', start=1)
set ray_trace_frames, 1
mpng snapshot/mov

# after that you can convert the snapshots into animation under Linux by
# convert -delay 20 snapshot/*.png out.gif

• Unpack it and run ./setup.sh
• copy the created “pymol” to /home/usr/bin

• http://blog.163.com/cmh_lj/blog/static/10081230420117431119912/

• http://pymol.sourceforge.net/newman/user/S0220commands.html
• https://pymolwiki.org/index.php/Selection_Algebra
• pymol wiki
• obsolete
• http://www.ucl.ac.uk/~rmhasek/pymol.html
• http://www.chem.umass.edu/~jhardy/BMS2006Files/pymol%20morphing/
• http://www.csb.yale.edu/userguides/graphics/pymol/electro.html
• http://www-cryst.bioc.cam.ac.uk/members/zbyszek/figures_pymol#move
• http://www.pymolwiki.org/index.php/Displaying_Biochemical_Properties#Polar_surface_area
• http://pymol.sourceforge.net/newman/user/S0220commands.html