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--- amber [2018/05/15 03:59] – created - external edit 127.0.0.1
+++ amber [2025/10/05 10:48] (current) – [Atom Mask] yxue
@@ Line 2: / Line 2: @@
   * http://ambermd.org/tutorials/
   * http://ringo.ams.sunysb.edu/index.php/2016_AMBER_tutorial_with_Beta_Trypsin
+====== Basics ======
+===== Atom Mask =====
+ * [[https://amberhub.chpc.utah.edu/atom-mask-selection-syntax/ | Link]]
+|Syntax| Example|
+|:{residue numlist}|	’:1-10’, ’:1,3,5’, ’:1-3,5,7-9’|
+|@{atom numlist}|	’@12,17’, ’@54-85’, ’@12,54-85,90’|
+|:{residue namelist}|	’:LYS’, ’:ARG,ALA,GLY’|
+|@{atom namelist}|	’@CA’, ’@CA,C,O,N,H’|
+|@%{atom type name}|	’@%CT’|
+|@/{atom_element_name}|	’@/N’|
+|Selection for CHAIN ID’s|	#Select chain A \\ ::A \\ # Select residues 1-10 of chains A, B, and C \\ ::A,B,C:1-10\\ # Select protein backbone atoms of residues 2-20 in chains A and B \\ ::A,B:2-20@CA,C,O,N|
 ====== Links ======

XueLab