http://rainbow.life.tsinghua.edu.cn/wiki/ 2026-08-07T02:04:26+00:00 http://rainbow.life.tsinghua.edu.cn/wiki/ http://rainbow.life.tsinghua.edu.cn/wiki/_media/wiki:dokuwiki.svg text/html 2026-05-27T14:24:12+00:00 zhangyk (zhangyk@undisclosed.example.com) http://rainbow.life.tsinghua.edu.cn/wiki/biocomput:week14_15_16?rev=1779891852&do=diff Group Title Attachments 4 Transfer learning to leverage larger datasets for improved prediction of protein stability changes [ Pre.pdf] [ Ref.pdf] 6 Machine learning coarse-grained potentials of protein thermodynamics [ Pre.pdf] [ Ref.pdf] 10 EQUIFORMERV2: IMPROVED EQUIVARIANT TRANSFORMER FOR SCALING TO HIGHER-DEGREE REPRESENTATIONS text/html 2026-05-27T14:23:43+00:00 zhangyk (zhangyk@undisclosed.example.com) http://rainbow.life.tsinghua.edu.cn/wiki/?image=biocomput%3Agroup4_pre.pdf&ns=biocomput&rev=1779891823&tab_details=history&media_do=diff&do=media <img src="http://rainbow.life.tsinghua.edu.cn/wiki/lib/images/fileicons/svg/pdf.svg" alt="group4_pre.pdf" loading="lazy" width="500" height="500" /> text/html 2026-05-27T14:23:43+00:00 zhangyk (zhangyk@undisclosed.example.com) http://rainbow.life.tsinghua.edu.cn/wiki/?image=biocomput%3Agroup10_pre.pdf&ns=biocomput&rev=1779891823&tab_details=history&media_do=diff&do=media <img src="http://rainbow.life.tsinghua.edu.cn/wiki/lib/images/fileicons/svg/pdf.svg" alt="group10_pre.pdf" loading="lazy" width="500" height="500" /> text/html 2026-05-27T14:23:42+00:00 zhangyk (zhangyk@undisclosed.example.com) http://rainbow.life.tsinghua.edu.cn/wiki/?image=biocomput%3Agroup10_reference.pdf&ns=biocomput&rev=1779891822&tab_details=history&media_do=diff&do=media <img src="http://rainbow.life.tsinghua.edu.cn/wiki/lib/images/fileicons/svg/pdf.svg" alt="group10_reference.pdf" loading="lazy" width="500" height="500" /> text/html 2026-05-27T14:23:42+00:00 zhangyk (zhangyk@undisclosed.example.com) http://rainbow.life.tsinghua.edu.cn/wiki/?image=biocomput%3Agroup6_pre.pdf&ns=biocomput&rev=1779891822&tab_details=history&media_do=diff&do=media <img src="http://rainbow.life.tsinghua.edu.cn/wiki/lib/images/fileicons/svg/pdf.svg" alt="group6_pre.pdf" loading="lazy" width="500" height="500" /> text/html 2026-05-27T14:23:42+00:00 zhangyk (zhangyk@undisclosed.example.com) http://rainbow.life.tsinghua.edu.cn/wiki/?image=biocomput%3Agroup6_reference.pdf&ns=biocomput&rev=1779891822&tab_details=history&media_do=diff&do=media <img src="http://rainbow.life.tsinghua.edu.cn/wiki/lib/images/fileicons/svg/pdf.svg" alt="group6_reference.pdf" loading="lazy" width="500" height="500" /> text/html 2026-05-27T14:23:42+00:00 zhangyk (zhangyk@undisclosed.example.com) http://rainbow.life.tsinghua.edu.cn/wiki/?image=biocomput%3Agroup4_reference.pdf&ns=biocomput&rev=1779891822&tab_details=history&media_do=diff&do=media <img src="http://rainbow.life.tsinghua.edu.cn/wiki/lib/images/fileicons/svg/pdf.svg" alt="group4_reference.pdf" loading="lazy" width="500" height="500" /> text/html 2026-05-27T14:16:05+00:00 zhangyk (zhangyk@undisclosed.example.com) http://rainbow.life.tsinghua.edu.cn/wiki/biocomput?rev=1779891365&do=diff 2026春《AI赋能的生物大分子模拟和计算》 * 课程安排（实时更新） * 课前准备 * Week01：计算环境的搭建 * Homework1 * Week02：提升代码运行的效率 * Week03：分子动力学模拟的基础知识和操作流程（1） * Week04：分子动力学模拟的基础知识和操作流程（2） * Homework2 * Week05：自由能计算和加速采样（1） * Week06：自由能计算和加速采样（2） * Week07：深度学习编程基础 * Week08：深度学习的应用实例（1） * Week09：深度学习的应用实例（2） * Week10：QM方法；AI-based docking * Week11：缺课不补 * Week12/13：AI驱动的MD力场 * Week14/15/16：大作业汇报… text/html 2026-05-23T04:07:06+00:00 zhangyk (zhangyk@undisclosed.example.com) http://rainbow.life.tsinghua.edu.cn/wiki/workshop?rev=1779509226&do=diff Timeline Deep Learning * Reproduction of SPOTRNA (by Haoren Qiu, 20240323) * Reproduction of PCANN (by Haocheng Sun, 20251122) * Protein Structure Prediction 1: Training of SPIRED (by Yuankuan Zhang, 20260117) * Protein Structure Prediction 2: Algorithm of Attention (by Yuankuan Zhang, 20260124) * AIDocking tool Chi1 and Conventional tool Autodock Vina (by Zihang Zhou, 20260404) * AI2BMD (by Yuankuan Zhang, 20260523) DFT * DFT (by Yikan Zhang, 20251011) text/html 2026-05-19T07:05:27+00:00 zhangyk (zhangyk@undisclosed.example.com) http://rainbow.life.tsinghua.edu.cn/wiki/?image=biocomput%3Aweek-12_13.pdf&ns=biocomput&rev=1779174327&tab_details=history&media_do=diff&do=media <img src="http://rainbow.life.tsinghua.edu.cn/wiki/lib/images/fileicons/svg/pdf.svg" alt="week-12_13.pdf" loading="lazy" width="500" height="500" /> text/html 2026-04-29T15:10:03+00:00 zhangyk (zhangyk@undisclosed.example.com) http://rainbow.life.tsinghua.edu.cn/wiki/?image=biocomput%3A10.4.1-autodock_vina.mp4&ns=biocomput&rev=1777475403&tab_details=history&media_do=diff&do=media <img src="http://rainbow.life.tsinghua.edu.cn/wiki/lib/images/fileicons/svg/mp4.svg" alt="10.4.1-autodock_vina.mp4" loading="lazy" width="500" height="500" />