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workshop [2025/06/19 02:10] – zhangykworkshop [2026/01/17 07:13] (current) – zhangyk
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-====== SHAPE ====== +[[ workshop:timeline | Timeline ]]
-[[workshop:shape]] (by Zhang Yikan on June 14th 2025)+
  
 +====== Deep Learning ======
 +  * [[workshop:spotrna | Reproduction of SPOTRNA]] (by Haoren Qiu, 20240323)
 +  * [[workshop:pcann | Reproduction of PCANN]] (by Haocheng Sun, 20251122)
 +  * [[workshop:pspred | Protein Structure Prediction]] (by Yuankuan Zhang, 20260117)
  
 +====== DFT ======
 +  * [[workshop:dft | DFT]] (by Zhang Yikan, 20251011)
  
 +====== Molecular Dynamics ======
 +  * [[workshop:gamd | Reproduction of GaMD: Use GaMD to study combining of RNA and ligand ]] (by Yang Shen, 20251227)
 +  * [[workshop:modified_residue | Modified residued in Amber ]] (by Yang Shen. 20240113)
 +  * [[workshop:wham | Weighted Histogram Analysis Method ]] (by Lu Yan, 20231202)
 +  * [[workshop:nmr_restraints | NMR restraints in amber ]] (by Lan Xiang, 20231118)
 +  * [[workshop:cpptraj | Introduction of CPPTARJ/PYTRAJ ]] (by Banglong Wang, 20231118)
  
 +====== NMR Assignment ======
 +  * [[workshop:nmr_assignment | NMR assignment]] (by Xu Ning, 20240404+20240511)
  
 +====== PDBLib ======
 +  * [[workshop:pdblib | PDBLib]] (by Prof. Xue, 20251025)
 +  * [[workshop:nass | Nass]] (by Prof. Xue, 20251206)
  
-====== Molecular Dynamics ======+====== SHAPE ====== 
 +  * [[workshop:qushape | Use of QuShape]] (by Zhang Yikan, 20250614) 
 +  * [[workshop:shape | RNA secondary structure mapping by SHAPE]] (by Zhang Yikan, 20240302) 
 + 
 +====== Tools ====== 
 +  * [[workshop:aitools | Codes representation and sofware recommendation]] (by Zihang Zhou, 20240113) 
 +  * [[workshop:copilot | Github Copilot]] (by Yuankuan Zhang, 20231202) 
 + 
 +====== Older ones ====== 
 + 
 +===== Molecular Dynamics =====
 [[ https://ambermd.org/Manuals.php | Manual Of Amber ]] [[ https://ambermd.org/Manuals.php | Manual Of Amber ]]
  
-====== Machine Learning ======+===== Machine Learning =====
 Data cleaning (From Wang Banglong) Data cleaning (From Wang Banglong)
  
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 Data (From Qiu Haoren) Data (From Qiu Haoren)
  
-====== Cuda Programming ======+===== Cuda Programming =====
 [[https://cloud.tsinghua.edu.cn/f/6e460d1035894f62b262 | CUDA by example (Chapter 1~5)]] [[https://cloud.tsinghua.edu.cn/f/6e460d1035894f62b262 | CUDA by example (Chapter 1~5)]]
  
 [[https://github.com/CodedK/CUDA-by-Example-source-code-for-the-book-s-examples- | and its source codes]] [[https://github.com/CodedK/CUDA-by-Example-source-code-for-the-book-s-examples- | and its source codes]]
  
- 
-====== Older ones ====== 
 ===== NMR Textbook Chapters ===== ===== NMR Textbook Chapters =====
 Book-a: [[http://rainbow.life.tsinghua.edu.cn/~liun/Understanding_NMR_Spectroscopy-2rd_Edition.pdf | Understanding NMR Spectroscopy]] \\ Book-a: [[http://rainbow.life.tsinghua.edu.cn/~liun/Understanding_NMR_Spectroscopy-2rd_Edition.pdf | Understanding NMR Spectroscopy]] \\
workshop.1750299024.txt.gz · Last modified: 2025/06/19 02:10 by zhangyk

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