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workshop

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workshop [2025/10/28 08:01] – zhangykworkshop [2026/01/17 07:13] (current) – zhangyk
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-====== PDBLib ====== +[[ workshop:timeline | Timeline ]] 
-[[workshop:pdblib | PDBLib]] (by Prof. Xue on October 25th 2025)+ 
 +====== Deep Learning ====== 
 +  * [[workshop:spotrna | Reproduction of SPOTRNA]] (by Haoren Qiu, 20240323) 
 +  * [[workshop:pcann | Reproduction of PCANN]] (by Haocheng Sun, 20251122) 
 +  * [[workshop:pspred | Protein Structure Prediction]] (by Yuankuan Zhang, 20260117)
  
 ====== DFT ====== ====== DFT ======
-[[workshop:dft | DFT]] (by Zhang Yikan on October 11th 2025)+  * [[workshop:dft | DFT]] (by Zhang Yikan, 20251011) 
 + 
 +====== Molecular Dynamics ====== 
 +  * [[workshop:gamd | Reproduction of GaMD: Use GaMD to study combining of RNA and ligand ]] (by Yang Shen, 20251227) 
 +  * [[workshop:modified_residue | Modified residued in Amber ]] (by Yang Shen. 20240113) 
 +  * [[workshop:wham | Weighted Histogram Analysis Method ]] (by Lu Yan, 20231202) 
 +  * [[workshop:nmr_restraints | NMR restraints in amber ]] (by Lan Xiang, 20231118) 
 +  * [[workshop:cpptraj | Introduction of CPPTARJ/PYTRAJ ]] (by Banglong Wang, 20231118)
  
 ====== NMR Assignment ====== ====== NMR Assignment ======
-[[workshop:nmr_assignment | NMR assignment]] (by Xu Ning on April 4th and May 11th, 2024)+  * [[workshop:nmr_assignment | NMR assignment]] (by Xu Ning, 20240404+20240511)
  
-====== SHAPE ====== +====== PDBLib ====== 
-  * [[workshop:qushape | Use of QuShape]] (by Zhang Yikan on June 14th 2025) +  * [[workshop:pdblib | PDBLib]] (by Prof. Xue, 20251025) 
-  * [[workshop:shape | RNA secondary structure mapping by SHAPE]] (by Zhang Yikan on March 2rd 2024)+  * [[workshop:nass | Nass]] (by Prof. Xue, 20251206)
  
-====== Deep Learning ====== +====== SHAPE ====== 
-  * [[workshop:spotrna | Reproduction of SPOTRNA]] (by Haoren Qiu on March 23th 2024) +  * [[workshop:qushape | Use of QuShape]] (by Zhang Yikan, 20250614) 
- +  * [[workshop:shape | RNA secondary structure mapping by SHAPE]] (by Zhang Yikan, 20240302)
-====== Tools ====== +
-  * [[workshop:aitools | Codes representation and sofware recommendation]] (by Zihang Zhou on January 13th 2024) +
-  * [[workshop:copilot | Github Copilot]] (by Yuankuan Zhang on December 2rd 2023)+
  
 ====== Tools ====== ====== Tools ======
-  * [[workshop:cpptraj | Introduction of CPPTARJ/PYTRAJ ]] (by Banglong Wang on November 18th 2023) +  * [[workshop:aitools | Codes representation and sofware recommendation]] (by Zihang Zhou, 20240113) 
-  * [[workshop:modified_residue | Modified residued in Amber ]] (by Yang Shen on January 13th 2024) +  * [[workshop:copilot | Github Copilot]] (by Yuankuan Zhang, 20231202)
-  * [[workshop:nmr_restraints | NMR restraints in amber ]] (by Lan Xiang on November 18th 2023) +
-  * [[workshop:wham | Weighted Histogram Analysis Method ]] (by Lu Yan on December 2rd 2023)+
  
 ====== Older ones ====== ====== Older ones ======
workshop.1761638509.txt.gz · Last modified: 2025/10/28 08:01 by zhangyk

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