PDBLib (by Prof. Xue on October 25th 2025)

DFT (by Zhang Yikan on October 11th 2025)

NMR assignment (by Xu Ning on April 4th and May 11th, 2024)

• Use of QuShape (by Zhang Yikan on June 14th 2025)
• RNA secondary structure mapping by SHAPE (by Zhang Yikan on March 2rd 2024)

• Reproduction of SPOTRNA (by Haoren Qiu on March 23th 2024)

• Codes representation and sofware recommendation (by Zihang Zhou on January 13th 2024)
• Github Copilot (by Yuankuan Zhang on December 2rd 2023)

• Introduction of CPPTARJ/PYTRAJ (by Banglong Wang on November 18th 2023)
• Modified residued in Amber (by Yang Shen on January 13th 2024)
• NMR restraints in amber (by Lan Xiang on November 18th 2023)
• Weighted Histogram Analysis Method (by Lu Yan on December 2rd 2023)

Manual Of Amber

Data cleaning (From Wang Banglong)

CS prediction (From Wang Banglong)

Data (From Qiu Haoren)

CUDA by example (Chapter 1~5)

and its source codes

Book-a: Understanding NMR Spectroscopy
Book-b: Fundamentals of Protein NMR
Book-c: Protein NMR Spectroscopy

• Book-a: 5.1-5.3 (Fourier transformation)
• Book-a: 5.4-5.6 (Data processing)
• Book-a: chapter 13 (How the spectrometer works)
• Book-a: chapter 6 (The quantum mechanics of one spin)
• Book-a: chapter 7 (Product operators)
• Book-a: 8.3-8.4 (COSY and DQF-COSY)
• Book-a: 8.11; Book-b: 9.5; Book-c: 6.5 (TOCSY)
• Book-b: Appendix D (Building Blocks of Pulse Sequences)
• Book-b: 14.4 (Side-chain Assignment)

• Explain in details any pulse sequences that you think are interesting/useful

• Select 1-3 papers from any folder

• Any science-related stuff that you want to share with us