• Reproduction of SPOTRNA (by Haoren Qiu on March 23rd 2024)
• Reproduction of PCANN (by Haocheng Sun on November 22nd 2025)

• DFT (by Zhang Yikan on October 11th 2025)

• Reproduction of GaMD: Use GaMD to study combining of RNA and ligand (by Yang Shen on December 27th 2025)
• Modified residued in Amber (by Yang Shen on January 13th 2024)
• Weighted Histogram Analysis Method (by Lu Yan on December 2nd 2023)
• NMR restraints in amber (by Lan Xiang on November 18th 2023)
• Introduction of CPPTARJ/PYTRAJ (by Banglong Wang on November 18th 2023)

• NMR assignment (by Xu Ning on April 4th and May 11th, 2024)

• PDBLib (by Prof. Xue on October 25th 2025)
• Nass (by Prof. Xue on December 6th 2025)

• Use of QuShape (by Zhang Yikan on June 14th 2025)
• RNA secondary structure mapping by SHAPE (by Zhang Yikan on March 2nd 2024)

• Codes representation and sofware recommendation (by Zihang Zhou on January 13th 2024)
• Github Copilot (by Yuankuan Zhang on December 2nd 2023)

Manual Of Amber

Data cleaning (From Wang Banglong)

CS prediction (From Wang Banglong)

Data (From Qiu Haoren)

CUDA by example (Chapter 1~5)

and its source codes

Book-a: Understanding NMR Spectroscopy
Book-b: Fundamentals of Protein NMR
Book-c: Protein NMR Spectroscopy

• Book-a: 5.1-5.3 (Fourier transformation)
• Book-a: 5.4-5.6 (Data processing)
• Book-a: chapter 13 (How the spectrometer works)
• Book-a: chapter 6 (The quantum mechanics of one spin)
• Book-a: chapter 7 (Product operators)
• Book-a: 8.3-8.4 (COSY and DQF-COSY)
• Book-a: 8.11; Book-b: 9.5; Book-c: 6.5 (TOCSY)
• Book-b: Appendix D (Building Blocks of Pulse Sequences)
• Book-b: 14.4 (Side-chain Assignment)

• Explain in details any pulse sequences that you think are interesting/useful

• Select 1-3 papers from any folder

• Any science-related stuff that you want to share with us