• Reproduction of SPOTRNA (by Haoren Qiu, 20240323)
• Reproduction of PCANN (by Haocheng Sun, 20251122)
• Protein Structure Prediction (by Yuankuan Zhang, 20260117)

• DFT (by Zhang Yikan, 20251011)

• Reproduction of GaMD: Use GaMD to study combining of RNA and ligand (by Yang Shen, 20251227)
• Modified residued in Amber (by Yang Shen. 20240113)
• Weighted Histogram Analysis Method (by Lu Yan, 20231202)
• NMR restraints in amber (by Lan Xiang, 20231118)
• Introduction of CPPTARJ/PYTRAJ (by Banglong Wang, 20231118)

• NMR assignment (by Xu Ning, 20240404+20240511)

• PDBLib (by Prof. Xue, 20251025)
• Nass (by Prof. Xue, 20251206)

• Use of QuShape (by Zhang Yikan, 20250614)
• RNA secondary structure mapping by SHAPE (by Zhang Yikan, 20240302)

• Codes representation and sofware recommendation (by Zihang Zhou, 20240113)
• Github Copilot (by Yuankuan Zhang, 20231202)

Manual Of Amber

Data cleaning (From Wang Banglong)

CS prediction (From Wang Banglong)

Data (From Qiu Haoren)

CUDA by example (Chapter 1~5)

and its source codes

Book-a: Understanding NMR Spectroscopy
Book-b: Fundamentals of Protein NMR
Book-c: Protein NMR Spectroscopy

• Book-a: 5.1-5.3 (Fourier transformation)
• Book-a: 5.4-5.6 (Data processing)
• Book-a: chapter 13 (How the spectrometer works)
• Book-a: chapter 6 (The quantum mechanics of one spin)
• Book-a: chapter 7 (Product operators)
• Book-a: 8.3-8.4 (COSY and DQF-COSY)
• Book-a: 8.11; Book-b: 9.5; Book-c: 6.5 (TOCSY)
• Book-b: Appendix D (Building Blocks of Pulse Sequences)
• Book-b: 14.4 (Side-chain Assignment)

• Explain in details any pulse sequences that you think are interesting/useful

• Select 1-3 papers from any folder

• Any science-related stuff that you want to share with us