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| workshop [2025/10/28 08:02] – zhangyk | workshop [2026/02/05 10:33] (current) – zhangyk |
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| ====== PDBLib ====== | [[ workshop:timeline | Timeline ]] |
| [[workshop:pdblib | PDBLib]] (by Prof. Xue on October 25th 2025) | |
| | ====== Deep Learning ====== |
| | * [[workshop:spotrna | Reproduction of SPOTRNA]] (by Haoren Qiu, 20240323) |
| | * [[workshop:pcann | Reproduction of PCANN]] (by Haocheng Sun, 20251122) |
| | * [[workshop:pspred | Protein Structure Prediction 1: Training of SPIRED]] (by Yuankuan Zhang, 20260117) |
| | * [[workshop:pspred-attention | Protein Structure Prediction 2: Algorithm of Attention]] (by Yuankuan Zhang, 20260124) |
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| ====== DFT ====== | ====== DFT ====== |
| [[workshop:dft | DFT]] (by Zhang Yikan on October 11th 2025) | * [[workshop:dft | DFT]] (by Yikan Zhang, 20251011) |
| | * [[workshop:dft-cs | DFT for chemical shift]] (by Prof. Xue, 20260131) |
| | |
| | ====== Molecular Dynamics ====== |
| | * [[workshop:nmr_restraints | NMR restraints in amber ]] (by Lan Xiang, 20231118) |
| | * [[workshop:cpptraj | Introduction of CPPTARJ/PYTRAJ ]] (by Banglong Wang, 20231118) |
| | * [[workshop:wham | Weighted Histogram Analysis Method ]] (by Lu Yan, 20231202) |
| | * [[workshop:modified_residue | Modified residued in Amber ]] (by Yang Shen. 20240113) |
| | * [[workshop:gamd | Reproduction of GaMD: Use GaMD to study combining of RNA and ligand ]] (by Yang Shen, 20251227) |
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| ====== NMR Assignment ====== | ====== NMR Assignment ====== |
| [[workshop:nmr_assignment | NMR assignment]] (by Xu Ning on April 4th and May 11th, 2024) | * [[workshop:nmr_assignment | NMR assignment]] (by Xu Ning, 20240404+20240511) |
| | |
| | ====== PDBLib ====== |
| | * [[workshop:pdblib | PDBLib]] (by Prof. Xue, 20251025) |
| | * [[workshop:nass | Nass]] (by Prof. Xue, 20251206) |
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| ====== SHAPE ====== | ====== SHAPE ====== |
| * [[workshop:qushape | Use of QuShape]] (by Zhang Yikan on June 14th 2025) | * [[workshop:qushape | Use of QuShape]] (by Zhang Yikan, 20250614) |
| * [[workshop:shape | RNA secondary structure mapping by SHAPE]] (by Zhang Yikan on March 2rd 2024) | * [[workshop:shape | RNA secondary structure mapping by SHAPE]] (by Zhang Yikan, 20240302) |
| | |
| ====== Deep Learning ====== | |
| * [[workshop:spotrna | Reproduction of SPOTRNA]] (by Haoren Qiu on March 23th 2024) | |
| |
| ====== Tools ====== | ====== Tools ====== |
| * [[workshop:aitools | Codes representation and sofware recommendation]] (by Zihang Zhou on January 13th 2024) | * [[workshop:aitools | Codes representation and sofware recommendation]] (by Zihang Zhou, 20240113) |
| * [[workshop:copilot | Github Copilot]] (by Yuankuan Zhang on December 2rd 2023) | * [[workshop:copilot | Github Copilot]] (by Yuankuan Zhang, 20231202) |
| | |
| ====== Molecular Dynamics ====== | |
| * [[workshop:cpptraj | Introduction of CPPTARJ/PYTRAJ ]] (by Banglong Wang on November 18th 2023) | |
| * [[workshop:modified_residue | Modified residued in Amber ]] (by Yang Shen on January 13th 2024) | |
| * [[workshop:nmr_restraints | NMR restraints in amber ]] (by Lan Xiang on November 18th 2023) | |
| * [[workshop:wham | Weighted Histogram Analysis Method ]] (by Lu Yan on December 2rd 2023) | |
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| ====== Older ones ====== | ====== Older ones ====== |
