RNAEAPath Home

Installation

Install Vienna RNA

Install the google sparse_hash_map pacakge

./configure --prefix=/home/usr/share/sparsehash
make
make install

Add INCDIRS = -I /home/usr/share/sparsehash/include/ to file makefile

Install the RNAEAPath

There might be one error (due to the version of compiler g++, probably).

Modify the file RPath.c REF:

//check if a file exists or not
bool fexists(const char *filename)
{
  ifstream ifile(filename);
  // label
  // return ifile;
  return ifile.good();
}

Usage

Two segments are needed: location of the software and the configuration.

I write a file run.sh.

#!/bin/bash

# add the installation path to your ENV
# Also, you can append the line to your '.bashrc', '.cshrc' or whatever
export PATH=$PATH:/home/usr/share/RNAEAPath
# the location of one prerequsite 'RNAeval' is given in this file
# as well as other configurations
# only needed to be done once actually
cp /home/usr/share/RNAEAPath/config ./
# the command line to run the software
RNAEAPath -i sample.faa -d ./sample